************************************************
* START TREE SEARCH USING MPI WITH 1 PROCESSES *
************************************************
Random seed of master = 307898
IQ-TREE MPI multicore version 1.5.5 for Linux 64-bit built May 30 2018
Copyright (c) 2011-2017 by Bui Quang Minh, Nguyen Lam Tung,
Olga Chernomor, Heiko Schmidt, and Arndt von Haeseler.

Host:    holy7c08306.rc.fas.harvard.edu (AVX512, FMA3, 188 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/7.1.0-fasrc01/openmpi/2.1.0-fasrc02/iqtree/1.5.5-fasrc02/bin/iqtree-omp-mpi -nt 48 -st AA -ninit 10 -bb 1500 -msub nuclear -s 15cephala_compopass.phy -m MFP+MERGE -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -mrate G,R,E
Seed:    307898 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Fri Apr  3 06:01:49 2020
Kernel:  AVX+FMA - 48 threads (48 CPU cores detected)

Reading alignment file 15cephala_compopass.phy ... Phylip format detected
Alignment most likely contains protein sequences
Alignment has 27 sequences with 527865 columns and 307812 patterns (164186 informative sites, 267523 constant sites)
                                         Gap/Ambiguity  Composition  p-value
   1  Cylichnatys_sp.?_MCZ_Mala_387550                       19.87%    failed      0.00%
   2  Philine_quadripartita_ZSM_Mol_20170311          26.75%    failed      1.33%
   3  Diniatys_dentifer_MCZ_Mala_387511               40.68%    failed      0.00%
   4  Bulla_gouldiana_MCZ_Mala_388933                            32.71%    failed      0.01%
   5  Navanax_inermis_MCZ_388934                19.33%    failed      0.02%
   6  Newnesia_antarctica_SIO-BIC_M16270                               20.27%    failed      0.00%
   7  Abavopsis_latosoleata_ZSM_Mol_20142034        19.53%    failed      1.20%
   8  Siphopteron_nigromarginatum_MCZ_3875353   19.40%    failed      0.00%
   9  Gastropteron_rubrum_ZSM_20142005          25.15%    failed      0.00%
  10  Sagaminopteron_ornatum_MCZ_Mala_385476_MCZ_Mala_385476                    52.91%    failed      0.00%
  11  Philinoglossa_praelongata_ZSM_20142032    18.07%    failed      0.02%
  12  Dolabrifera_dolabrifera_MCZ_Mala_384336_MCZ_Mala_384336                   58.00%    failed      0.00%
  13  Colpodaspis_thompsoni_MCZ_Mala_387534           27.70%    failed      0.02%
  14  Clione_limacina_antarctica_SRR1505107                         29.03%    failed      0.00%
  15  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_386342                              51.49%    failed      0.00%
  16  Spinophallus_falciphallus_MCZ_Mala_385531                 66.67%    failed      0.00%
  17  Camachoaglaja_cf._berolina_MCZ_Mala_384347                                 33.66%    failed      0.86%
  18  Mnestia_sp._MCZ_Mala_387530                35.93%    failed      0.00%
  19  Haminoea_antillarum_SRR1505111_SRR1505111                       30.70%    failed      0.00%
  20  Phanerophthalmus_luteus_MCZ_Mala_386354                21.29%    failed      0.00%
  21  Dolabella_auricularia_MCZ_386346          28.18%    failed      0.00%
  22  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_387541                   19.30%    failed      1.88%
  23  Mariaglaja_inornata_MCZ_Mala_385532                      79.92%    failed      0.00%
  24  Odontoglaja_guamensis_MCZ_Mala_386324_MCZ_Mala_386324                     76.88%    failed      0.00%
  25  Acteocina_inculta_MCZ_388932              73.98%    failed      0.00%
  26  Limacina_helicina_MCZ_Mala_393334_MCZ_Mala_393334                         66.71%    failed      0.00%
  27  Haloa_sp._MCZ_Mala_385550                               94.50%    failed      0.00%
WARNING: 9 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                     40.32%  27 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000189442 for long alignment

Create initial parsimony tree by phylogenetic likelihood library (PLL)... 2.054 seconds

NOTE: ModelFinder requires 14602 MB RAM!
ModelFinder will test 206 protein models (sample size: 527865) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  Dayhoff+G4    6528170.831  52  13056445.661 13056445.672 13057026.844
  2  Dayhoff+R2    6570563.635  53  13141233.269 13141233.280 13141825.629
  3  Dayhoff+R3    6518277.467  55  13036664.935 13036664.946 13037279.647
  4  Dayhoff+R4    6510727.724  57  13021569.448 13021569.460 13022206.514
  5  Dayhoff+R5    6509422.985  59  13018963.970 13018963.983 13019623.389
  6  Dayhoff+R6    6509294.478  61  13018710.956 13018710.970 13019392.728
  7  Dayhoff+R7    6509258.663  63  13018643.325 13018643.340 13019347.451
  8  Dayhoff+R8    6509221.537  65  13018573.074 13018573.090 13019299.552
  9  Dayhoff+R9    6509195.519  67  13018525.038 13018525.055 13019273.870
 10  Dayhoff+R10   6509187.192  69  13018512.384 13018512.402 13019283.569
 11  Dayhoff       7057179.760  51  14114461.520 14114461.530 14115031.526
 12  Dayhoff+F+G4  6512977.298  71  13026096.597 13026096.616 13026890.135
 13  Dayhoff+F+R2  6556932.190  72  13114008.381 13114008.401 13114813.096
 14  Dayhoff+F+R3  6502914.155  74  13005976.311 13005976.332 13006803.379
 15  Dayhoff+F+R4  6495101.533  76  12990355.065 12990355.087 12991204.486
 16  Dayhoff+F+R5  6493741.860  78  12987639.719 12987639.743 12988511.494
 17  Dayhoff+F+R6  6493547.423  80  12987254.847 12987254.871 12988148.974
 18  Dayhoff+F+R7  6493513.990  82  12987191.979 12987192.005 12988108.460
 19  Dayhoff+F+R8  6493503.284  84  12987174.567 12987174.594 12988113.401
 20  Dayhoff+F+R9  Skipped 
 21  Dayhoff+F+R10 Skipped 
 22  Dayhoff+F     7051894.839  70  14103929.678 14103929.697 14104712.040
 23  JTT+G4        6487715.103  52  12975534.205 12975534.216 12976115.388
 24  JTT+R2        6524997.093  53  13050100.185 13050100.196 13050692.545
 25  JTT+R3        6477458.112  55  12955026.224 12955026.236 12955640.937
 26  JTT+R4        6471365.129  57  12942844.258 12942844.271 12943481.324
 27  JTT+R5        6470633.342  59  12941384.683 12941384.696 12942044.102
 28  JTT+R6        6470585.395  61  12941292.790 12941292.804 12941974.562
 29  JTT+R7        6470572.440  63  12941270.879 12941270.894 12941975.005
 30  JTT+R8        Skipped 
 31  JTT+R9        Skipped 
 32  JTT+R10       Skipped 
 33  JTT           7008861.440  51  14017824.879 14017824.889 14018394.886
 34  JTT+F+G4      6482486.679  71  12965115.358 12965115.377 12965908.896
 35  JTT+F+R2      6519872.159  72  13039888.318 13039888.338 13040693.033
 36  JTT+F+R3      6472074.480  74  12944296.961 12944296.982 12945124.029
 37  JTT+F+R4      6465989.899  76  12932131.798 12932131.820 12932981.219
 38  JTT+F+R5      6465221.479  78  12930598.957 12930598.981 12931470.732
 39  JTT+F+R6      6465174.071  80  12930508.141 12930508.166 12931402.269
 40  JTT+F+R7      6465160.890  82  12930485.781 12930485.806 12931402.261
 41  JTT+F+R8      6465157.145  84  12930482.289 12930482.316 12931421.123
 42  JTT+F+R9      Skipped 
 43  JTT+F+R10     Skipped 
 44  JTT+F         7005860.611  70  14011861.222 14011861.241 14012643.584
 45  WAG+G4        6501596.019  52  13003296.038 13003296.048 13003877.221
 46  WAG+R2        6535598.869  53  13071303.739 13071303.750 13071896.098
 47  WAG+R3        6492242.425  55  12984594.850 12984594.862 12985209.563
 48  WAG+R4        6486776.501  57  12973667.003 12973667.015 12974304.069
 49  WAG+R5        6486139.531  59  12972397.061 12972397.075 12973056.480
 50  WAG+R6        6486093.102  61  12972308.203 12972308.218 12972989.976
 51  WAG+R7        6486076.352  63  12972278.703 12972278.719 12972982.829
 52  WAG+R8        6486072.441  65  12972274.883 12972274.899 12973001.361
 53  WAG+R9        Skipped 
 54  WAG+R10       Skipped 
 55  WAG           7003363.364  51  14006828.727 14006828.737 14007398.734
 56  WAG+F+G4      6503086.707  71  13006315.414 13006315.433 13007108.952
 57  WAG+F+R2      6538032.338  72  13076208.676 13076208.696 13077013.390
 58  WAG+F+R3      6493574.078  74  12987296.155 12987296.176 12988123.223
 59  WAG+F+R4      6487845.331  76  12975842.663 12975842.685 12976692.084
 60  WAG+F+R5      6487143.941  78  12974443.882 12974443.905 12975315.657
 61  WAG+F+R6      6487082.267  80  12974324.535 12974324.559 12975218.662
 62  WAG+F+R7      6487064.746  82  12974293.493 12974293.519 12975209.974
 63  WAG+F+R8      6487062.108  84  12974292.215 12974292.243 12975231.050
 64  WAG+F+R9      Skipped 
 65  WAG+F+R10     Skipped 
 66  WAG+F         7009964.391  70  14020068.781 14020068.800 14020851.143
 67  VT+G4         6519001.992  52  13038107.984 13038107.994 13038689.167
 68  VT+R2         6549182.331  53  13098470.663 13098470.673 13099063.022
 69  VT+R3         6510481.387  55  13021072.773 13021072.785 13021687.486
 70  VT+R4         6506230.122  57  13012574.244 13012574.257 13013211.310
 71  VT+R5         6505858.101  59  13011834.202 13011834.216 13012493.621
 72  VT+R6         6505844.161  61  13011810.323 13011810.337 13012492.095
 73  VT+R7         6505833.071  63  13011792.141 13011792.157 13012496.267
 74  VT+R8         Skipped 
 75  VT+R9         Skipped 
 76  VT+R10        Skipped 
 77  VT            7009615.995  51  14019333.990 14019334.000 14019903.997
 78  VT+F+G4       6517691.907  71  13035525.814 13035525.834 13036319.353
 79  VT+F+R2       6547730.919  72  13095605.837 13095605.857 13096410.552
 80  VT+F+R3       6509149.500  74  13018446.999 13018447.020 13019274.067
 81  VT+F+R4       6504881.500  76  13009915.001 13009915.023 13010764.422
 82  VT+F+R5       6504487.095  78  13009130.191 13009130.214 13010001.965
 83  VT+F+R6       6504472.715  80  13009105.429 13009105.454 13009999.557
 84  VT+F+R7       6504460.926  82  13009085.852 13009085.878 13010002.333
 85  VT+F+R8       Skipped 
 86  VT+F+R9       Skipped 
 87  VT+F+R10      Skipped 
 88  VT+F          7007897.191  70  14015934.382 14015934.401 14016716.744
 89  LG+G4         6486677.461  52  12973458.921 12973458.931 12974040.104
 90  LG+R2         6527462.581  53  13055031.163 13055031.174 13055623.522
 91  LG+R3         6476536.223  55  12953182.445 12953182.457 12953797.158
 92  LG+R4         6469458.309  57  12939030.618 12939030.630 12939667.684
 93  LG+R5         6468504.329  59  12937126.657 12937126.670 12937786.076
 94  LG+R6         6468389.315  61  12936900.631 12936900.645 12937582.403
 95  LG+R7         6468371.179  63  12936868.359 12936868.374 12937572.484
 96  LG+R8         6468368.506  65  12936867.012 12936867.028 12937593.490
 97  LG+R9         Skipped 
 98  LG+R10        Skipped 
 99  LG            7023952.899  51  14048007.798 14048007.808 14048577.805
100  LG+F+G4       6478226.176  71  12956594.351 12956594.371 12957387.890
101  LG+F+R2       6518176.742  72  13036497.485 13036497.505 13037302.200
102  LG+F+R3       6467798.599  74  12935745.198 12935745.219 12936572.267
103  LG+F+R4       6460749.196  76  12921650.392 12921650.414 12922499.813
104  LG+F+R5       6459756.952  78  12919669.903 12919669.927 12920541.678
105  LG+F+R6       6459637.057  80  12919434.114 12919434.138 12920328.241
106  LG+F+R7       6459617.054  82  12919398.108 12919398.134 12920314.589
107  LG+F+R8       6459614.637  84  12919397.274 12919397.301 12920336.108
108  LG+F+R9       Skipped 
109  LG+F+R10      Skipped 
110  LG+F          7010698.091  70  14021536.183 14021536.202 14022318.544
111  DCMut+G4      6528660.852  52  13057425.705 13057425.715 13058006.888
112  DCMut+R2      6570881.250  53  13141868.500 13141868.511 13142460.860
113  DCMut+R3      6518786.877  55  13037683.755 13037683.766 13038298.467
114  DCMut+R4      6511270.015  57  13022654.030 13022654.043 13023291.096
115  DCMut+R5      6509971.910  59  13020061.819 13020061.833 13020721.239
116  DCMut+R6      6509748.644  61  13019619.287 13019619.301 13020301.059
117  DCMut+R7      6509729.238  63  13019584.476 13019584.491 13020288.601
118  DCMut+R8      6509727.037  65  13019584.074 13019584.091 13020310.553
119  DCMut+R9      Skipped 
120  DCMut+R10     Skipped 
121  DCMut         7056961.953  51  14114025.905 14114025.915 14114595.912
122  DCMut+F+G4    6513354.275  71  13026850.550 13026850.569 13027644.088
123  DCMut+F+R2    6557125.647  72  13114395.295 13114395.315 13115200.010
124  DCMut+F+R3    6503308.710  74  13006765.421 13006765.442 13007592.489
125  DCMut+F+R4    6495529.474  76  12991210.949 12991210.971 12992060.370
126  DCMut+F+R5    6494177.846  78  12988511.691 12988511.714 12989383.466
127  DCMut+F+R6    6493946.007  80  12988052.014 12988052.039 12988946.142
128  DCMut+F+R7    6493928.844  82  12988021.689 12988021.714 12988938.170
129  DCMut+F+R8    6493926.566  84  12988021.131 12988021.158 12988959.965
130  DCMut+F+R9    Skipped 
131  DCMut+F+R10   Skipped 
132  DCMut+F       7051467.358  70  14103074.716 14103074.735 14103857.078
133  PMB+G4        6585273.220  52  13170650.440 13170650.451 13171231.623
134  PMB+R2        6615706.207  53  13231518.413 13231518.424 13232110.773
135  PMB+R3        6577118.546  55  13154347.093 13154347.104 13154961.805
136  PMB+R4        6573217.663  57  13146549.327 13146549.339 13147186.393
137  PMB+R5        6572899.411  59  13145916.821 13145916.835 13146576.241
138  PMB+R6        6572884.844  61  13145891.688 13145891.702 13146573.460
139  PMB+R7        6572877.237  63  13145880.475 13145880.490 13146584.600
140  PMB+R8        Skipped 
141  PMB+R9        Skipped 
142  PMB+R10       Skipped 
143  PMB           7078857.059  51  14157816.118 14157816.128 14158386.124
144  PMB+F+G4      6573824.129  71  13147790.258 13147790.277 13148583.796
145  PMB+F+R2      6604285.800  72  13208715.599 13208715.619 13209520.314
146  PMB+F+R3      6565282.922  74  13130713.844 13130713.865 13131540.912
147  PMB+F+R4      6561092.473  76  13122336.946 13122336.969 13123186.368
148  PMB+F+R5      6560697.529  78  13121551.058 13121551.082 13122422.833
149  PMB+F+R6      6560676.082  80  13121512.165 13121512.189 13122406.292
150  PMB+F+R7      6560668.318  82  13121500.635 13121500.661 13122417.116
151  PMB+F+R8      Skipped 
152  PMB+F+R9      Skipped 
153  PMB+F+R10     Skipped 
154  PMB+F         7066626.165  70  14133392.330 14133392.348 14134174.691
155  JTTDCMut+G4   6487696.472  52  12975496.944 12975496.955 12976078.127
156  JTTDCMut+R2   6525060.060  53  13050226.120 13050226.131 13050818.480
157  JTTDCMut+R3   6477415.207  55  12954940.415 12954940.426 12955555.127
158  JTTDCMut+R4   6471301.694  57  12942717.389 12942717.401 12943354.455
159  JTTDCMut+R5   6470559.664  59  12941237.328 12941237.342 12941896.747
160  JTTDCMut+R6   6470504.098  61  12941130.197 12941130.211 12941811.969
161  JTTDCMut+R7   6470494.574  63  12941115.148 12941115.163 12941819.273
162  JTTDCMut+R8   Skipped 
163  JTTDCMut+R9   Skipped 
164  JTTDCMut+R10  Skipped 
165  JTTDCMut      7008023.514  51  14016149.027 14016149.037 14016719.034
166  JTTDCMut+F+G4 6482520.840  71  12965183.679 12965183.698 12965977.217
167  JTTDCMut+F+R2 6520047.438  72  13040238.877 13040238.896 13041043.591
168  JTTDCMut+F+R3 6472088.453  74  12944324.906 12944324.927 12945151.974
169  JTTDCMut+F+R4 6465970.667  76  12932093.334 12932093.356 12932942.755
170  JTTDCMut+F+R5 6465193.076  78  12930542.151 12930542.174 12931413.926
171  JTTDCMut+F+R6 6465135.551  80  12930431.103 12930431.127 12931325.230
172  JTTDCMut+F+R7 6465126.469  82  12930416.938 12930416.963 12931333.419
173  JTTDCMut+F+R8 Skipped 
174  JTTDCMut+F+R9 Skipped 
175  JTTDCMut+F+R10 Skipped 
176  JTTDCMut+F    7005578.326  70  14011296.651 14011296.670 14012079.013
177  Blosum62+G4   6586653.076  52  13173410.151 13173410.162 13173991.334
178  Blosum62+R2   6617895.321  53  13235896.642 13235896.652 13236489.001
179  Blosum62+R3   6578579.942  55  13157269.883 13157269.895 13157884.596
180  Blosum62+R4   6574379.530  57  13148873.061 13148873.073 13149510.126
181  Blosum62+R5   6573979.471  59  13148076.942 13148076.956 13148736.362
182  Blosum62+R6   6573959.691  61  13148041.383 13148041.397 13148723.155
183  Blosum62+R7   6573952.174  63  13148030.349 13148030.364 13148734.474
184  Blosum62+R8   Skipped 
185  Blosum62+R9   Skipped 
186  Blosum62+R10  Skipped 
187  Blosum62      7080484.703  51  14161071.406 14161071.416 14161641.413
188  Blosum62+F+G4 6576166.462  71  13152474.923 13152474.943 13153268.462
189  Blosum62+F+R2 6607412.034  72  13214968.068 13214968.087 13215772.782
190  Blosum62+F+R3 6567713.267  74  13135574.534 13135574.555 13136401.602
191  Blosum62+F+R4 6563147.646  76  13126447.291 13126447.313 13127296.712
192  Blosum62+F+R5 6562693.963  78  13125543.926 13125543.949 13126415.700
193  Blosum62+F+R6 6562666.903  80  13125493.805 13125493.830 13126387.933
194  Blosum62+F+R7 6562659.856  82  13125483.712 13125483.737 13126400.192
195  Blosum62+F+R8 Skipped 
196  Blosum62+F+R9 Skipped 
197  Blosum62+F+R10 Skipped 
198  Blosum62+F    7068959.302  70  14138058.604 14138058.623 14138840.966
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
199  LG4M          6511844.132  52  13023792.264 13023792.275 13024373.447
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
200  LG4X          6490432.858  57  12980979.715 12980979.728 12981616.781
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
201  LG+C10        6484404.368  52  12968912.736 12968912.747 12969493.919
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}
202  LG+C20        6450196.395  52  12900496.791 12900496.801 12901077.974
Model LG+C30 is alias for LG+POISSON+G+FMIX{C30pi1:1:0.0095783264,C30pi2:1:0.0248476365,C30pi3:1:0.0636309366,C30pi4:1:0.0537939225,C30pi5:1:0.0295885587,C30pi6:1:0.0117587936,C30pi7:1:0.0132013428,C30pi8:1:0.0236868805,C30pi9:1:0.0261687659,C30pi10:1:0.0239821974,C30pi11:1:0.0257100906,C30pi12:1:0.0465072425,C30pi13:1:0.0546794546,C30pi14:1:0.0536085131,C30pi15:1:0.0270622670,C30pi16:1:0.0403913593,C30pi17:1:0.0474212700,C30pi18:1:0.0458816478,C30pi19:1:0.0214036510,C30pi20:1:0.0290385981,C30pi21:1:0.0123391793,C30pi22:1:0.0569350229,C30pi23:1:0.0419687568,C30pi24:1:0.0339027062,C30pi25:1:0.0388777376,C30pi26:1:0.0196343766,C30pi27:1:0.0233086174,C30pi28:1:0.0622722654,C30pi29:1:0.0184803385,C30pi30:1:0.0203395454}
203  LG+C30        6445515.868  52  12891135.736 12891135.746 12891716.919
Model LG+C40 is alias for LG+POISSON+G+FMIX{C40pi1:1:0.0223853788,C40pi2:1:0.0338891820,C40pi3:1:0.0577169375,C40pi4:1:0.0252416233,C40pi5:1:0.0108607921,C40pi6:1:0.0462373793,C40pi7:1:0.0102293175,C40pi8:1:0.0147523625,C40pi9:1:0.0143161352,C40pi10:1:0.0182302541,C40pi11:1:0.0204025079,C40pi12:1:0.0425505156,C40pi13:1:0.0248627269,C40pi14:1:0.0105892988,C40pi15:1:0.0188238725,C40pi16:1:0.0086663445,C40pi17:1:0.0148496147,C40pi18:1:0.0343037402,C40pi19:1:0.0225335203,C40pi20:1:0.0174068578,C40pi21:1:0.0112207827,C40pi22:1:0.0443532245,C40pi23:1:0.0392573370,C40pi24:1:0.0196756555,C40pi25:1:0.0287690328,C40pi26:1:0.0114441177,C40pi27:1:0.0112338740,C40pi28:1:0.0582694099,C40pi29:1:0.0444272279,C40pi30:1:0.0112010942,C40pi31:1:0.0145176111,C40pi32:1:0.0114629026,C40pi33:1:0.0239628061,C40pi34:1:0.0266266492,C40pi35:1:0.0481201159,C40pi36:1:0.0371147423,C40pi37:1:0.0160476688,C40pi38:1:0.0237249267,C40pi39:1:0.0235226203,C40pi40:1:0.0261998398}
STACK TRACE FOR DEBUGGING:
1   double* aligned_alloc<double>(unsigned long)
2   PhyloTree::initializeAllPartialLh(int&, int&, PhyloNode*, PhyloNode*)
3   PhyloTree::initializeAllPartialLh()
4   testModel(Params&, PhyloTree*, std::vector<ModelInfo, std::allocator<ModelInfo> >&, std::ostream&, ModelsBlock*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)
5   initializeParams(Params&, IQTree&, std::vector<ModelInfo, std::allocator<ModelInfo> >&, ModelsBlock*)
6   runTreeReconstruction(Params&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, IQTree&, std::vector<ModelInfo, std::allocator<ModelInfo> >&)
7   runPhyloAnalysis(Params&, Checkpoint*)
8   main()
9   __libc_start_main()
ERROR: Not enough memory, allocation of 197012633632 bytes failed (bad_alloc)

******************************************************
CHECKPOINT: Resuming analysis from 15cephala_compopass.phy.ckp.gz

************************************************
* START TREE SEARCH USING MPI WITH 1 PROCESSES *
************************************************
Random seed of master = 975953
IQ-TREE MPI multicore version 1.5.5 for Linux 64-bit built May 30 2018
Copyright (c) 2011-2017 by Bui Quang Minh, Nguyen Lam Tung,
Olga Chernomor, Heiko Schmidt, and Arndt von Haeseler.

Host:    holybigmem06.rc.fas.harvard.edu (AVX, FMA3, 503 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/7.1.0-fasrc01/openmpi/2.1.0-fasrc02/iqtree/1.5.5-fasrc02/bin/iqtree-omp-mpi -nt 64 -st AA -ninit 10 -bb 1500 -msub nuclear -s 15cephala_compopass.phy -m MFP+MERGE -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -mrate G,R,E
Seed:    307898 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Tue Apr  7 13:16:43 2020
Kernel:  AVX+FMA - 64 threads (64 CPU cores detected)

WARNING: Command-line argument `64` differs from checkpoint `48`
WARNING: Command-line differs from checkpoint!
Reading alignment file 15cephala_compopass.phy ... Phylip format detected
Alignment most likely contains protein sequences
Alignment has 27 sequences with 527865 columns and 307812 patterns (164186 informative sites, 267523 constant sites)
                                         Gap/Ambiguity  Composition  p-value
   1  Cylichnatys_sp.?_MCZ_Mala_387550                       19.87%    failed      0.00%
   2  Philine_quadripartita_ZSM_Mol_20170311          26.75%    failed      1.33%
   3  Diniatys_dentifer_MCZ_Mala_387511               40.68%    failed      0.00%
   4  Bulla_gouldiana_MCZ_Mala_388933                            32.71%    failed      0.01%
   5  Navanax_inermis_MCZ_388934                19.33%    failed      0.02%
   6  Newnesia_antarctica_SIO-BIC_M16270                               20.27%    failed      0.00%
   7  Abavopsis_latosoleata_ZSM_Mol_20142034        19.53%    failed      1.20%
   8  Siphopteron_nigromarginatum_MCZ_3875353   19.40%    failed      0.00%
   9  Gastropteron_rubrum_ZSM_20142005          25.15%    failed      0.00%
  10  Sagaminopteron_ornatum_MCZ_Mala_385476_MCZ_Mala_385476                    52.91%    failed      0.00%
  11  Philinoglossa_praelongata_ZSM_20142032    18.07%    failed      0.02%
  12  Dolabrifera_dolabrifera_MCZ_Mala_384336_MCZ_Mala_384336                   58.00%    failed      0.00%
  13  Colpodaspis_thompsoni_MCZ_Mala_387534           27.70%    failed      0.02%
  14  Clione_limacina_antarctica_SRR1505107                         29.03%    failed      0.00%
  15  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_386342                              51.49%    failed      0.00%
  16  Spinophallus_falciphallus_MCZ_Mala_385531                 66.67%    failed      0.00%
  17  Camachoaglaja_cf._berolina_MCZ_Mala_384347                                 33.66%    failed      0.86%
  18  Mnestia_sp._MCZ_Mala_387530                35.93%    failed      0.00%
  19  Haminoea_antillarum_SRR1505111_SRR1505111                       30.70%    failed      0.00%
  20  Phanerophthalmus_luteus_MCZ_Mala_386354                21.29%    failed      0.00%
  21  Dolabella_auricularia_MCZ_386346          28.18%    failed      0.00%
  22  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_387541                   19.30%    failed      1.88%
  23  Mariaglaja_inornata_MCZ_Mala_385532                      79.92%    failed      0.00%
  24  Odontoglaja_guamensis_MCZ_Mala_386324_MCZ_Mala_386324                     76.88%    failed      0.00%
  25  Acteocina_inculta_MCZ_388932              73.98%    failed      0.00%
  26  Limacina_helicina_MCZ_Mala_393334_MCZ_Mala_393334                         66.71%    failed      0.00%
  27  Haloa_sp._MCZ_Mala_385550                               94.50%    failed      0.00%
WARNING: 9 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                     40.32%  27 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000189442 for long alignment

CHECKPOINT: Initial tree restored

NOTE: Reusing information from model file 15cephala_compopass.phy.model
NOTE: ModelFinder requires 14602 MB RAM!
ModelFinder will test 206 protein models (sample size: 527865) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  Dayhoff+G4    6528170.831  52  13056445.661 13056445.672 13057026.844
  2  Dayhoff+R2    6570563.635  53  13141233.269 13141233.280 13141825.629
  3  Dayhoff+R3    6518277.467  55  13036664.935 13036664.946 13037279.647
  4  Dayhoff+R4    6510727.724  57  13021569.448 13021569.460 13022206.514
  5  Dayhoff+R5    6509422.985  59  13018963.970 13018963.983 13019623.389
  6  Dayhoff+R6    6509294.478  61  13018710.956 13018710.970 13019392.728
  7  Dayhoff+R7    6509258.662  63  13018643.325 13018643.340 13019347.451
  8  Dayhoff+R8    6509221.537  65  13018573.074 13018573.090 13019299.552
  9  Dayhoff+R9    6509195.519  67  13018525.038 13018525.055 13019273.870
 10  Dayhoff+R10   6509187.192  69  13018512.384 13018512.402 13019283.569
 11  Dayhoff       7057179.760  51  14114461.520 14114461.530 14115031.526
 12  Dayhoff+F+G4  6512977.298  71  13026096.597 13026096.616 13026890.135
 13  Dayhoff+F+R2  6556932.190  72  13114008.381 13114008.401 13114813.096
 14  Dayhoff+F+R3  6502914.155  74  13005976.311 13005976.332 13006803.379
 15  Dayhoff+F+R4  6495101.532  76  12990355.065 12990355.087 12991204.486
 16  Dayhoff+F+R5  6493741.860  78  12987639.719 12987639.743 12988511.494
 17  Dayhoff+F+R6  6493547.423  80  12987254.847 12987254.871 12988148.974
 18  Dayhoff+F+R7  6493513.990  82  12987191.979 12987192.005 12988108.460
 19  Dayhoff+F+R8  6493503.284  84  12987174.567 12987174.594 12988113.401
 20  Dayhoff+F+R9  Skipped 
 21  Dayhoff+F+R10 Skipped 
 22  Dayhoff+F     7051894.839  70  14103929.678 14103929.697 14104712.040
 23  JTT+G4        6487715.103  52  12975534.205 12975534.216 12976115.388
 24  JTT+R2        6524997.093  53  13050100.185 13050100.196 13050692.545
 25  JTT+R3        6477458.112  55  12955026.224 12955026.236 12955640.937
 26  JTT+R4        6471365.129  57  12942844.258 12942844.271 12943481.324
 27  JTT+R5        6470633.342  59  12941384.683 12941384.696 12942044.102
 28  JTT+R6        6470585.395  61  12941292.790 12941292.804 12941974.562
 29  JTT+R7        6470572.440  63  12941270.879 12941270.894 12941975.005
 30  JTT+R8        Skipped 
 31  JTT+R9        Skipped 
 32  JTT+R10       Skipped 
 33  JTT           7008861.440  51  14017824.879 14017824.889 14018394.886
 34  JTT+F+G4      6482486.679  71  12965115.358 12965115.377 12965908.896
 35  JTT+F+R2      6519872.159  72  13039888.318 13039888.338 13040693.033
 36  JTT+F+R3      6472074.480  74  12944296.961 12944296.982 12945124.029
 37  JTT+F+R4      6465989.899  76  12932131.798 12932131.820 12932981.219
 38  JTT+F+R5      6465221.479  78  12930598.957 12930598.981 12931470.732
 39  JTT+F+R6      6465174.071  80  12930508.141 12930508.166 12931402.269
 40  JTT+F+R7      6465160.890  82  12930485.781 12930485.806 12931402.261
 41  JTT+F+R8      6465157.145  84  12930482.289 12930482.316 12931421.123
 42  JTT+F+R9      Skipped 
 43  JTT+F+R10     Skipped 
 44  JTT+F         7005860.611  70  14011861.222 14011861.241 14012643.584
 45  WAG+G4        6501596.019  52  13003296.038 13003296.048 13003877.221
 46  WAG+R2        6535598.869  53  13071303.739 13071303.750 13071896.098
 47  WAG+R3        6492242.425  55  12984594.850 12984594.862 12985209.563
 48  WAG+R4        6486776.501  57  12973667.003 12973667.015 12974304.069
 49  WAG+R5        6486139.531  59  12972397.061 12972397.075 12973056.480
 50  WAG+R6        6486093.102  61  12972308.203 12972308.218 12972989.976
 51  WAG+R7        6486076.352  63  12972278.703 12972278.719 12972982.829
 52  WAG+R8        6486072.441  65  12972274.883 12972274.899 12973001.362
 53  WAG+R9        Skipped 
 54  WAG+R10       Skipped 
 55  WAG           7003363.364  51  14006828.727 14006828.737 14007398.734
 56  WAG+F+G4      6503086.707  71  13006315.414 13006315.433 13007108.952
 57  WAG+F+R2      6538032.338  72  13076208.676 13076208.696 13077013.391
 58  WAG+F+R3      6493574.078  74  12987296.155 12987296.176 12988123.223
 59  WAG+F+R4      6487845.331  76  12975842.663 12975842.685 12976692.084
 60  WAG+F+R5      6487143.941  78  12974443.882 12974443.906 12975315.657
 61  WAG+F+R6      6487082.267  80  12974324.535 12974324.559 12975218.662
 62  WAG+F+R7      6487064.746  82  12974293.493 12974293.519 12975209.974
 63  WAG+F+R8      6487062.108  84  12974292.215 12974292.242 12975231.049
 64  WAG+F+R9      Skipped 
 65  WAG+F+R10     Skipped 
 66  WAG+F         7009964.390  70  14020068.781 14020068.800 14020851.143
 67  VT+G4         6519001.992  52  13038107.984 13038107.994 13038689.167
 68  VT+R2         6549182.331  53  13098470.663 13098470.673 13099063.022
 69  VT+R3         6510481.387  55  13021072.773 13021072.785 13021687.486
 70  VT+R4         6506230.122  57  13012574.244 13012574.257 13013211.310
 71  VT+R5         6505858.101  59  13011834.202 13011834.216 13012493.621
 72  VT+R6         6505844.161  61  13011810.323 13011810.337 13012492.095
 73  VT+R7         6505833.071  63  13011792.141 13011792.156 13012496.267
 74  VT+R8         Skipped 
 75  VT+R9         Skipped 
 76  VT+R10        Skipped 
 77  VT            7009615.995  51  14019333.990 14019334.000 14019903.997
 78  VT+F+G4       6517691.907  71  13035525.814 13035525.834 13036319.353
 79  VT+F+R2       6547730.919  72  13095605.837 13095605.857 13096410.552
 80  VT+F+R3       6509149.499  74  13018446.999 13018447.020 13019274.067
 81  VT+F+R4       6504881.500  76  13009915.001 13009915.023 13010764.422
 82  VT+F+R5       6504487.095  78  13009130.191 13009130.214 13010001.965
 83  VT+F+R6       6504472.715  80  13009105.429 13009105.454 13009999.557
 84  VT+F+R7       6504460.926  82  13009085.852 13009085.878 13010002.333
 85  VT+F+R8       Skipped 
 86  VT+F+R9       Skipped 
 87  VT+F+R10      Skipped 
 88  VT+F          7007897.191  70  14015934.382 14015934.401 14016716.744
 89  LG+G4         6486677.461  52  12973458.921 12973458.931 12974040.104
 90  LG+R2         6527462.581  53  13055031.163 13055031.174 13055623.522
 91  LG+R3         6476536.223  55  12953182.445 12953182.457 12953797.158
 92  LG+R4         6469458.309  57  12939030.618 12939030.630 12939667.684
 93  LG+R5         6468504.328  59  12937126.657 12937126.670 12937786.076
 94  LG+R6         6468389.315  61  12936900.631 12936900.645 12937582.403
 95  LG+R7         6468371.179  63  12936868.359 12936868.374 12937572.485
 96  LG+R8         6468368.506  65  12936867.012 12936867.028 12937593.491
 97  LG+R9         Skipped 
 98  LG+R10        Skipped 
 99  LG            7023952.899  51  14048007.798 14048007.808 14048577.805
100  LG+F+G4       6478226.176  71  12956594.351 12956594.371 12957387.890
101  LG+F+R2       6518176.742  72  13036497.485 13036497.505 13037302.200
102  LG+F+R3       6467798.599  74  12935745.198 12935745.219 12936572.266
103  LG+F+R4       6460749.196  76  12921650.392 12921650.414 12922499.813
104  LG+F+R5       6459756.952  78  12919669.903 12919669.927 12920541.678
105  LG+F+R6       6459637.057  80  12919434.114 12919434.138 12920328.241
106  LG+F+R7       6459617.054  82  12919398.108 12919398.134 12920314.589
107  LG+F+R8       6459614.637  84  12919397.274 12919397.301 12920336.108
108  LG+F+R9       Skipped 
109  LG+F+R10      Skipped 
110  LG+F          7010698.091  70  14021536.183 14021536.202 14022318.545
111  DCMut+G4      6528660.853  52  13057425.705 13057425.715 13058006.888
112  DCMut+R2      6570881.250  53  13141868.500 13141868.511 13142460.860
113  DCMut+R3      6518786.877  55  13037683.755 13037683.766 13038298.467
114  DCMut+R4      6511270.015  57  13022654.030 13022654.043 13023291.096
115  DCMut+R5      6509971.910  59  13020061.819 13020061.833 13020721.239
116  DCMut+R6      6509748.644  61  13019619.287 13019619.301 13020301.059
117  DCMut+R7      6509729.238  63  13019584.476 13019584.491 13020288.602
118  DCMut+R8      6509727.037  65  13019584.074 13019584.091 13020310.553
119  DCMut+R9      Skipped 
120  DCMut+R10     Skipped 
121  DCMut         7056961.953  51  14114025.905 14114025.915 14114595.912
122  DCMut+F+G4    6513354.275  71  13026850.550 13026850.569 13027644.088
123  DCMut+F+R2    6557125.647  72  13114395.295 13114395.315 13115200.010
124  DCMut+F+R3    6503308.711  74  13006765.421 13006765.442 13007592.489
125  DCMut+F+R4    6495529.474  76  12991210.949 12991210.971 12992060.370
126  DCMut+F+R5    6494177.845  78  12988511.691 12988511.714 12989383.465
127  DCMut+F+R6    6493946.007  80  12988052.014 12988052.039 12988946.142
128  DCMut+F+R7    6493928.844  82  12988021.689 12988021.715 12988938.170
129  DCMut+F+R8    6493926.565  84  12988021.131 12988021.158 12988959.965
130  DCMut+F+R9    Skipped 
131  DCMut+F+R10   Skipped 
132  DCMut+F       7051467.358  70  14103074.716 14103074.735 14103857.078
133  PMB+G4        6585273.220  52  13170650.440 13170650.451 13171231.623
134  PMB+R2        6615706.207  53  13231518.413 13231518.424 13232110.773
135  PMB+R3        6577118.546  55  13154347.093 13154347.104 13154961.805
136  PMB+R4        6573217.663  57  13146549.327 13146549.340 13147186.393
137  PMB+R5        6572899.411  59  13145916.821 13145916.835 13146576.241
138  PMB+R6        6572884.844  61  13145891.688 13145891.702 13146573.460
139  PMB+R7        6572877.237  63  13145880.475 13145880.490 13146584.601
140  PMB+R8        Skipped 
141  PMB+R9        Skipped 
142  PMB+R10       Skipped 
143  PMB           7078857.059  51  14157816.118 14157816.128 14158386.124
144  PMB+F+G4      6573824.129  71  13147790.258 13147790.277 13148583.796
145  PMB+F+R2      6604285.800  72  13208715.599 13208715.619 13209520.314
146  PMB+F+R3      6565282.922  74  13130713.844 13130713.865 13131540.912
147  PMB+F+R4      6561092.473  76  13122336.946 13122336.969 13123186.368
148  PMB+F+R5      6560697.529  78  13121551.058 13121551.082 13122422.833
149  PMB+F+R6      6560676.082  80  13121512.165 13121512.189 13122406.292
150  PMB+F+R7      6560668.317  82  13121500.635 13121500.661 13122417.116
151  PMB+F+R8      Skipped 
152  PMB+F+R9      Skipped 
153  PMB+F+R10     Skipped 
154  PMB+F         7066626.165  70  14133392.330 14133392.348 14134174.691
155  JTTDCMut+G4   6487696.472  52  12975496.944 12975496.955 12976078.127
156  JTTDCMut+R2   6525060.060  53  13050226.120 13050226.131 13050818.480
157  JTTDCMut+R3   6477415.207  55  12954940.415 12954940.426 12955555.127
158  JTTDCMut+R4   6471301.694  57  12942717.389 12942717.401 12943354.455
159  JTTDCMut+R5   6470559.664  59  12941237.328 12941237.342 12941896.747
160  JTTDCMut+R6   6470504.098  61  12941130.197 12941130.211 12941811.969
161  JTTDCMut+R7   6470494.574  63  12941115.148 12941115.163 12941819.273
162  JTTDCMut+R8   Skipped 
163  JTTDCMut+R9   Skipped 
164  JTTDCMut+R10  Skipped 
165  JTTDCMut      7008023.514  51  14016149.027 14016149.037 14016719.034
166  JTTDCMut+F+G4 6482520.839  71  12965183.679 12965183.698 12965977.217
167  JTTDCMut+F+R2 6520047.438  72  13040238.877 13040238.897 13041043.592
168  JTTDCMut+F+R3 6472088.453  74  12944324.906 12944324.927 12945151.974
169  JTTDCMut+F+R4 6465970.667  76  12932093.334 12932093.356 12932942.755
170  JTTDCMut+F+R5 6465193.076  78  12930542.151 12930542.174 12931413.925
171  JTTDCMut+F+R6 6465135.551  80  12930431.103 12930431.127 12931325.230
172  JTTDCMut+F+R7 6465126.469  82  12930416.938 12930416.963 12931333.418
173  JTTDCMut+F+R8 Skipped 
174  JTTDCMut+F+R9 Skipped 
175  JTTDCMut+F+R10 Skipped 
176  JTTDCMut+F    7005578.326  70  14011296.651 14011296.670 14012079.013
177  Blosum62+G4   6586653.076  52  13173410.151 13173410.162 13173991.334
178  Blosum62+R2   6617895.321  53  13235896.642 13235896.652 13236489.001
179  Blosum62+R3   6578579.942  55  13157269.883 13157269.895 13157884.596
180  Blosum62+R4   6574379.530  57  13148873.061 13148873.073 13149510.127
181  Blosum62+R5   6573979.471  59  13148076.942 13148076.956 13148736.362
182  Blosum62+R6   6573959.691  61  13148041.383 13148041.397 13148723.155
183  Blosum62+R7   6573952.174  63  13148030.349 13148030.364 13148734.474
184  Blosum62+R8   Skipped 
185  Blosum62+R9   Skipped 
186  Blosum62+R10  Skipped 
187  Blosum62      7080484.703  51  14161071.406 14161071.416 14161641.413
188  Blosum62+F+G4 6576166.462  71  13152474.923 13152474.943 13153268.462
189  Blosum62+F+R2 6607412.034  72  13214968.068 13214968.088 13215772.783
190  Blosum62+F+R3 6567713.267  74  13135574.534 13135574.555 13136401.602
191  Blosum62+F+R4 6563147.646  76  13126447.291 13126447.313 13127296.712
192  Blosum62+F+R5 6562693.963  78  13125543.926 13125543.949 13126415.700
193  Blosum62+F+R6 6562666.903  80  13125493.805 13125493.830 13126387.933
194  Blosum62+F+R7 6562659.856  82  13125483.712 13125483.737 13126400.192
195  Blosum62+F+R8 Skipped 
196  Blosum62+F+R9 Skipped 
197  Blosum62+F+R10 Skipped 
198  Blosum62+F    7068959.302  70  14138058.604 14138058.623 14138840.966
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
199  LG4M          6511844.132  52  13023792.264 13023792.275 13024373.447
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
200  LG4X          6490432.858  57  12980979.715 12980979.728 12981616.781
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
201  LG+C10        6484404.368  52  12968912.736 12968912.747 12969493.919
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}
202  LG+C20        6450196.395  52  12900496.791 12900496.801 12901077.974
Model LG+C30 is alias for LG+POISSON+G+FMIX{C30pi1:1:0.0095783264,C30pi2:1:0.0248476365,C30pi3:1:0.0636309366,C30pi4:1:0.0537939225,C30pi5:1:0.0295885587,C30pi6:1:0.0117587936,C30pi7:1:0.0132013428,C30pi8:1:0.0236868805,C30pi9:1:0.0261687659,C30pi10:1:0.0239821974,C30pi11:1:0.0257100906,C30pi12:1:0.0465072425,C30pi13:1:0.0546794546,C30pi14:1:0.0536085131,C30pi15:1:0.0270622670,C30pi16:1:0.0403913593,C30pi17:1:0.0474212700,C30pi18:1:0.0458816478,C30pi19:1:0.0214036510,C30pi20:1:0.0290385981,C30pi21:1:0.0123391793,C30pi22:1:0.0569350229,C30pi23:1:0.0419687568,C30pi24:1:0.0339027062,C30pi25:1:0.0388777376,C30pi26:1:0.0196343766,C30pi27:1:0.0233086174,C30pi28:1:0.0622722654,C30pi29:1:0.0184803385,C30pi30:1:0.0203395454}
203  LG+C30        6445515.868  52  12891135.736 12891135.746 12891716.919
Model LG+C40 is alias for LG+POISSON+G+FMIX{C40pi1:1:0.0223853788,C40pi2:1:0.0338891820,C40pi3:1:0.0577169375,C40pi4:1:0.0252416233,C40pi5:1:0.0108607921,C40pi6:1:0.0462373793,C40pi7:1:0.0102293175,C40pi8:1:0.0147523625,C40pi9:1:0.0143161352,C40pi10:1:0.0182302541,C40pi11:1:0.0204025079,C40pi12:1:0.0425505156,C40pi13:1:0.0248627269,C40pi14:1:0.0105892988,C40pi15:1:0.0188238725,C40pi16:1:0.0086663445,C40pi17:1:0.0148496147,C40pi18:1:0.0343037402,C40pi19:1:0.0225335203,C40pi20:1:0.0174068578,C40pi21:1:0.0112207827,C40pi22:1:0.0443532245,C40pi23:1:0.0392573370,C40pi24:1:0.0196756555,C40pi25:1:0.0287690328,C40pi26:1:0.0114441177,C40pi27:1:0.0112338740,C40pi28:1:0.0582694099,C40pi29:1:0.0444272279,C40pi30:1:0.0112010942,C40pi31:1:0.0145176111,C40pi32:1:0.0114629026,C40pi33:1:0.0239628061,C40pi34:1:0.0266266492,C40pi35:1:0.0481201159,C40pi36:1:0.0371147423,C40pi37:1:0.0160476688,C40pi38:1:0.0237249267,C40pi39:1:0.0235226203,C40pi40:1:0.0261998398}
204  LG+C40        6441609.317  52  12883322.634 12883322.645 12883903.817
Model LG+C50 is alias for LG+POISSON+G+FMIX{C50pi1:1:0.0164297003,C50pi2:1:0.0273175755,C50pi3:1:0.0460247610,C50pi4:1:0.0084864734,C50pi5:1:0.0125389252,C50pi6:1:0.0343549036,C50pi7:1:0.0130241102,C50pi8:1:0.0094755681,C50pi9:1:0.0190040551,C50pi10:1:0.0151902354,C50pi11:1:0.0320534760,C50pi12:1:0.0210059850,C50pi13:1:0.0237408547,C50pi14:1:0.0239841203,C50pi15:1:0.0213748021,C50pi16:1:0.0210717705,C50pi17:1:0.0050241805,C50pi18:1:0.0166262276,C50pi19:1:0.0143945956,C50pi20:1:0.0104391130,C50pi21:1:0.0107628277,C50pi22:1:0.0148818171,C50pi23:1:0.0321480239,C50pi24:1:0.0145477978,C50pi25:1:0.0332355807,C50pi26:1:0.0143190281,C50pi27:1:0.0234478734,C50pi28:1:0.0183044983,C50pi29:1:0.0403269452,C50pi30:1:0.0135629530,C50pi31:1:0.0091880799,C50pi32:1:0.0158270022,C50pi33:1:0.0121019379,C50pi34:1:0.0353560982,C50pi35:1:0.0404495617,C50pi36:1:0.0104569232,C50pi37:1:0.0146187792,C50pi38:1:0.0093984095,C50pi39:1:0.0146773809,C50pi40:1:0.0201635562,C50pi41:1:0.0255640273,C50pi42:1:0.0039486842,C50pi43:1:0.0393652608,C50pi44:1:0.0056415419,C50pi45:1:0.0382833580,C50pi46:1:0.0039735086,C50pi47:1:0.0140269355,C50pi48:1:0.0476703673,C50pi49:1:0.0204062788,C50pi50:1:0.0117835304}
205  LG+C50        6439083.507  52  12878271.014 12878271.024 12878852.197
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}
206  LG+C60        6436742.153  52  12873588.306 12873588.317 12874169.489
Akaike Information Criterion:           LG+C60
Corrected Akaike Information Criterion: LG+C60
Bayesian Information Criterion:         LG+C60
Best-fit model: LG+C60 chosen according to BIC

All model information printed to 15cephala_compopass.phy.model
CPU time for ModelFinder: 725570.291 seconds (201h:32m:50s)
Wall-clock time for ModelFinder: 14459.764 seconds (4h:0m:59s)
Generating 1500 samples for ultrafast bootstrap (seed: 307898)...
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}

NOTE: 309941 MB RAM (302 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -6604380.967
2. Current log-likelihood: -6448224.056
3. Current log-likelihood: -6437429.170
4. Current log-likelihood: -6436802.392
5. Current log-likelihood: -6436749.527
6. Current log-likelihood: -6436743.123
7. Current log-likelihood: -6436742.293
Optimal log-likelihood: -6436742.205
Mixture weights: 0.017 0.021 0.028 0.007 0.014 0.007 0.015 0.007 0.002 0.010 0.023 0.006 0.013 0.020 0.007 0.012 0.007 0.043 0.032 0.022 0.010 0.015 0.013 0.015 0.024 0.013 0.022 0.025 0.021 0.011 0.008 0.013 0.009 0.047 0.044 0.032 0.040 0.015 0.010 0.021 0.015 0.010 0.023 0.012 0.007 0.001 0.034 0.011 0.013 0.012 0.026 0.006 0.010 0.014 0.022 0.020 0.004 0.011 0.013 0.012
Gamma shape alpha: 0.264
Parameters optimization took 7 rounds (4935.852 sec)
Computing ML distances based on estimated model parameters... 30.520 sec
Computing BIONJ tree...
0.008 seconds
Log-likelihood of BIONJ tree: -6437265.563
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 8 parsimony trees... 46.221 second
Computing log-likelihood of 8 initial trees ... 3159.017 seconds
Current best score: -6436742.205

Do NNI search on 10 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -6436742.168
Iteration 10 / LogL: -6436920.608 / Time: 15h:15m:5s
Finish initializing candidate tree set (1)
Current best tree score: -6436742.168 / CPU time: 32551.180
Number of iterations: 10
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------

******************************************************
CHECKPOINT: Resuming analysis from 15cephala_compopass.phy.ckp.gz

************************************************
* START TREE SEARCH USING MPI WITH 1 PROCESSES *
************************************************
Random seed of master = 813582
IQ-TREE MPI multicore version 1.5.5 for Linux 64-bit built May 30 2018
Copyright (c) 2011-2017 by Bui Quang Minh, Nguyen Lam Tung,
Olga Chernomor, Heiko Schmidt, and Arndt von Haeseler.

Host:    holybigmem07.rc.fas.harvard.edu (AVX, FMA3, 503 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/7.1.0-fasrc01/openmpi/2.1.0-fasrc02/iqtree/1.5.5-fasrc02/bin/iqtree-omp-mpi -nt 64 -st AA -ninit 10 -bb 1500 -msub nuclear -s 15cephala_compopass.phy -m MFP+MERGE -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -mrate G,R,E
Seed:    307898 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  8 11:05:46 2020
Kernel:  AVX+FMA - 64 threads (64 CPU cores detected)

Reading alignment file 15cephala_compopass.phy ... Phylip format detected
Alignment most likely contains protein sequences
Alignment has 27 sequences with 527865 columns and 307812 patterns (164186 informative sites, 267523 constant sites)
                                         Gap/Ambiguity  Composition  p-value
   1  Cylichnatys_sp.?_MCZ_Mala_387550                       19.87%    failed      0.00%
   2  Philine_quadripartita_ZSM_Mol_20170311          26.75%    failed      1.33%
   3  Diniatys_dentifer_MCZ_Mala_387511               40.68%    failed      0.00%
   4  Bulla_gouldiana_MCZ_Mala_388933                            32.71%    failed      0.01%
   5  Navanax_inermis_MCZ_388934                19.33%    failed      0.02%
   6  Newnesia_antarctica_SIO-BIC_M16270                               20.27%    failed      0.00%
   7  Abavopsis_latosoleata_ZSM_Mol_20142034        19.53%    failed      1.20%
   8  Siphopteron_nigromarginatum_MCZ_3875353   19.40%    failed      0.00%
   9  Gastropteron_rubrum_ZSM_20142005          25.15%    failed      0.00%
  10  Sagaminopteron_ornatum_MCZ_Mala_385476_MCZ_Mala_385476                    52.91%    failed      0.00%
  11  Philinoglossa_praelongata_ZSM_20142032    18.07%    failed      0.02%
  12  Dolabrifera_dolabrifera_MCZ_Mala_384336_MCZ_Mala_384336                   58.00%    failed      0.00%
  13  Colpodaspis_thompsoni_MCZ_Mala_387534           27.70%    failed      0.02%
  14  Clione_limacina_antarctica_SRR1505107                         29.03%    failed      0.00%
  15  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_386342                              51.49%    failed      0.00%
  16  Spinophallus_falciphallus_MCZ_Mala_385531                 66.67%    failed      0.00%
  17  Camachoaglaja_cf._berolina_MCZ_Mala_384347                                 33.66%    failed      0.86%
  18  Mnestia_sp._MCZ_Mala_387530                35.93%    failed      0.00%
  19  Haminoea_antillarum_SRR1505111_SRR1505111                       30.70%    failed      0.00%
  20  Phanerophthalmus_luteus_MCZ_Mala_386354                21.29%    failed      0.00%
  21  Dolabella_auricularia_MCZ_386346          28.18%    failed      0.00%
  22  Acteocina_sp._MCZ_Mala_386342._MCZ_Mala_387541                   19.30%    failed      1.88%
  23  Mariaglaja_inornata_MCZ_Mala_385532                      79.92%    failed      0.00%
  24  Odontoglaja_guamensis_MCZ_Mala_386324_MCZ_Mala_386324                     76.88%    failed      0.00%
  25  Acteocina_inculta_MCZ_388932              73.98%    failed      0.00%
  26  Limacina_helicina_MCZ_Mala_393334_MCZ_Mala_393334                         66.71%    failed      0.00%
  27  Haloa_sp._MCZ_Mala_385550                               94.50%    failed      0.00%
WARNING: 9 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                     40.32%  27 sequences failed composition chi2 test (p-value<5%; df=19)
NOTE: minimal branch length is reduced to 0.000000189442 for long alignment

CHECKPOINT: Initial tree restored

NOTE: Reusing information from model file 15cephala_compopass.phy.model
NOTE: ModelFinder requires 14602 MB RAM!
ModelFinder will test 206 protein models (sample size: 527865) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  Dayhoff+G4    6528170.831  52  13056445.661 13056445.672 13057026.844
  2  Dayhoff+R2    6570563.635  53  13141233.269 13141233.280 13141825.629
  3  Dayhoff+R3    6518277.467  55  13036664.935 13036664.946 13037279.647
  4  Dayhoff+R4    6510727.724  57  13021569.448 13021569.460 13022206.514
  5  Dayhoff+R5    6509422.985  59  13018963.970 13018963.983 13019623.389
  6  Dayhoff+R6    6509294.478  61  13018710.956 13018710.970 13019392.728
  7  Dayhoff+R7    6509258.662  63  13018643.325 13018643.340 13019347.451
  8  Dayhoff+R8    6509221.537  65  13018573.074 13018573.090 13019299.552
  9  Dayhoff+R9    6509195.519  67  13018525.038 13018525.055 13019273.870
 10  Dayhoff+R10   6509187.192  69  13018512.384 13018512.402 13019283.569
 11  Dayhoff       7057179.760  51  14114461.520 14114461.530 14115031.526
 12  Dayhoff+F+G4  6512977.298  71  13026096.597 13026096.616 13026890.135
 13  Dayhoff+F+R2  6556932.190  72  13114008.381 13114008.401 13114813.096
 14  Dayhoff+F+R3  6502914.155  74  13005976.311 13005976.332 13006803.379
 15  Dayhoff+F+R4  6495101.532  76  12990355.065 12990355.087 12991204.486
 16  Dayhoff+F+R5  6493741.860  78  12987639.719 12987639.743 12988511.494
 17  Dayhoff+F+R6  6493547.423  80  12987254.847 12987254.871 12988148.974
 18  Dayhoff+F+R7  6493513.990  82  12987191.979 12987192.005 12988108.460
 19  Dayhoff+F+R8  6493503.284  84  12987174.567 12987174.594 12988113.401
 20  Dayhoff+F+R9  Skipped 
 21  Dayhoff+F+R10 Skipped 
 22  Dayhoff+F     7051894.839  70  14103929.678 14103929.697 14104712.040
 23  JTT+G4        6487715.103  52  12975534.205 12975534.216 12976115.388
 24  JTT+R2        6524997.093  53  13050100.185 13050100.196 13050692.545
 25  JTT+R3        6477458.112  55  12955026.224 12955026.236 12955640.937
 26  JTT+R4        6471365.129  57  12942844.258 12942844.271 12943481.324
 27  JTT+R5        6470633.342  59  12941384.683 12941384.696 12942044.102
 28  JTT+R6        6470585.395  61  12941292.790 12941292.804 12941974.562
 29  JTT+R7        6470572.440  63  12941270.879 12941270.894 12941975.005
 30  JTT+R8        Skipped 
 31  JTT+R9        Skipped 
 32  JTT+R10       Skipped 
 33  JTT           7008861.440  51  14017824.879 14017824.889 14018394.886
 34  JTT+F+G4      6482486.679  71  12965115.358 12965115.377 12965908.896
 35  JTT+F+R2      6519872.159  72  13039888.318 13039888.338 13040693.033
 36  JTT+F+R3      6472074.480  74  12944296.961 12944296.982 12945124.029
 37  JTT+F+R4      6465989.899  76  12932131.798 12932131.820 12932981.219
 38  JTT+F+R5      6465221.479  78  12930598.957 12930598.981 12931470.732
 39  JTT+F+R6      6465174.071  80  12930508.141 12930508.166 12931402.269
 40  JTT+F+R7      6465160.890  82  12930485.781 12930485.806 12931402.261
 41  JTT+F+R8      6465157.145  84  12930482.289 12930482.316 12931421.123
 42  JTT+F+R9      Skipped 
 43  JTT+F+R10     Skipped 
 44  JTT+F         7005860.611  70  14011861.222 14011861.241 14012643.584
 45  WAG+G4        6501596.019  52  13003296.038 13003296.048 13003877.221
 46  WAG+R2        6535598.869  53  13071303.739 13071303.750 13071896.098
 47  WAG+R3        6492242.425  55  12984594.850 12984594.862 12985209.563
 48  WAG+R4        6486776.501  57  12973667.003 12973667.015 12974304.069
 49  WAG+R5        6486139.531  59  12972397.061 12972397.075 12973056.480
 50  WAG+R6        6486093.102  61  12972308.203 12972308.218 12972989.976
 51  WAG+R7        6486076.352  63  12972278.703 12972278.719 12972982.829
 52  WAG+R8        6486072.441  65  12972274.883 12972274.899 12973001.362
 53  WAG+R9        Skipped 
 54  WAG+R10       Skipped 
 55  WAG           7003363.364  51  14006828.727 14006828.737 14007398.734
 56  WAG+F+G4      6503086.707  71  13006315.414 13006315.433 13007108.952
 57  WAG+F+R2      6538032.338  72  13076208.676 13076208.696 13077013.391
 58  WAG+F+R3      6493574.078  74  12987296.155 12987296.176 12988123.223
 59  WAG+F+R4      6487845.331  76  12975842.663 12975842.685 12976692.084
 60  WAG+F+R5      6487143.941  78  12974443.882 12974443.906 12975315.657
 61  WAG+F+R6      6487082.267  80  12974324.535 12974324.559 12975218.662
 62  WAG+F+R7      6487064.746  82  12974293.493 12974293.519 12975209.974
 63  WAG+F+R8      6487062.108  84  12974292.215 12974292.242 12975231.049
 64  WAG+F+R9      Skipped 
 65  WAG+F+R10     Skipped 
 66  WAG+F         7009964.390  70  14020068.781 14020068.800 14020851.143
 67  VT+G4         6519001.992  52  13038107.984 13038107.994 13038689.167
 68  VT+R2         6549182.331  53  13098470.663 13098470.673 13099063.022
 69  VT+R3         6510481.387  55  13021072.773 13021072.785 13021687.486
 70  VT+R4         6506230.122  57  13012574.244 13012574.257 13013211.310
 71  VT+R5         6505858.101  59  13011834.202 13011834.216 13012493.621
 72  VT+R6         6505844.161  61  13011810.323 13011810.337 13012492.095
 73  VT+R7         6505833.071  63  13011792.141 13011792.156 13012496.267
 74  VT+R8         Skipped 
 75  VT+R9         Skipped 
 76  VT+R10        Skipped 
 77  VT            7009615.995  51  14019333.990 14019334.000 14019903.997
 78  VT+F+G4       6517691.907  71  13035525.814 13035525.834 13036319.353
 79  VT+F+R2       6547730.919  72  13095605.837 13095605.857 13096410.552
 80  VT+F+R3       6509149.499  74  13018446.999 13018447.020 13019274.067
 81  VT+F+R4       6504881.500  76  13009915.001 13009915.023 13010764.422
 82  VT+F+R5       6504487.095  78  13009130.191 13009130.214 13010001.965
 83  VT+F+R6       6504472.715  80  13009105.429 13009105.454 13009999.557
 84  VT+F+R7       6504460.926  82  13009085.852 13009085.878 13010002.333
 85  VT+F+R8       Skipped 
 86  VT+F+R9       Skipped 
 87  VT+F+R10      Skipped 
 88  VT+F          7007897.191  70  14015934.382 14015934.401 14016716.744
 89  LG+G4         6486677.461  52  12973458.921 12973458.931 12974040.104
 90  LG+R2         6527462.581  53  13055031.163 13055031.174 13055623.522
 91  LG+R3         6476536.223  55  12953182.445 12953182.457 12953797.158
 92  LG+R4         6469458.309  57  12939030.618 12939030.630 12939667.684
 93  LG+R5         6468504.328  59  12937126.657 12937126.670 12937786.076
 94  LG+R6         6468389.315  61  12936900.631 12936900.645 12937582.403
 95  LG+R7         6468371.179  63  12936868.359 12936868.374 12937572.485
 96  LG+R8         6468368.506  65  12936867.012 12936867.028 12937593.491
 97  LG+R9         Skipped 
 98  LG+R10        Skipped 
 99  LG            7023952.899  51  14048007.798 14048007.808 14048577.805
100  LG+F+G4       6478226.176  71  12956594.351 12956594.371 12957387.890
101  LG+F+R2       6518176.742  72  13036497.485 13036497.505 13037302.200
102  LG+F+R3       6467798.599  74  12935745.198 12935745.219 12936572.266
103  LG+F+R4       6460749.196  76  12921650.392 12921650.414 12922499.813
104  LG+F+R5       6459756.952  78  12919669.903 12919669.927 12920541.678
105  LG+F+R6       6459637.057  80  12919434.114 12919434.138 12920328.241
106  LG+F+R7       6459617.054  82  12919398.108 12919398.134 12920314.589
107  LG+F+R8       6459614.637  84  12919397.274 12919397.301 12920336.108
108  LG+F+R9       Skipped 
109  LG+F+R10      Skipped 
110  LG+F          7010698.091  70  14021536.183 14021536.202 14022318.545
111  DCMut+G4      6528660.853  52  13057425.705 13057425.715 13058006.888
112  DCMut+R2      6570881.250  53  13141868.500 13141868.511 13142460.860
113  DCMut+R3      6518786.877  55  13037683.755 13037683.766 13038298.467
114  DCMut+R4      6511270.015  57  13022654.030 13022654.043 13023291.096
115  DCMut+R5      6509971.910  59  13020061.819 13020061.833 13020721.239
116  DCMut+R6      6509748.644  61  13019619.287 13019619.301 13020301.059
117  DCMut+R7      6509729.238  63  13019584.476 13019584.491 13020288.602
118  DCMut+R8      6509727.037  65  13019584.074 13019584.091 13020310.553
119  DCMut+R9      Skipped 
120  DCMut+R10     Skipped 
121  DCMut         7056961.953  51  14114025.905 14114025.915 14114595.912
122  DCMut+F+G4    6513354.275  71  13026850.550 13026850.569 13027644.088
123  DCMut+F+R2    6557125.647  72  13114395.295 13114395.315 13115200.010
124  DCMut+F+R3    6503308.711  74  13006765.421 13006765.442 13007592.489
125  DCMut+F+R4    6495529.474  76  12991210.949 12991210.971 12992060.370
126  DCMut+F+R5    6494177.845  78  12988511.691 12988511.714 12989383.465
127  DCMut+F+R6    6493946.007  80  12988052.014 12988052.039 12988946.142
128  DCMut+F+R7    6493928.844  82  12988021.689 12988021.715 12988938.170
129  DCMut+F+R8    6493926.565  84  12988021.131 12988021.158 12988959.965
130  DCMut+F+R9    Skipped 
131  DCMut+F+R10   Skipped 
132  DCMut+F       7051467.358  70  14103074.716 14103074.735 14103857.078
133  PMB+G4        6585273.220  52  13170650.440 13170650.451 13171231.623
134  PMB+R2        6615706.207  53  13231518.413 13231518.424 13232110.773
135  PMB+R3        6577118.546  55  13154347.093 13154347.104 13154961.805
136  PMB+R4        6573217.663  57  13146549.327 13146549.340 13147186.393
137  PMB+R5        6572899.411  59  13145916.821 13145916.835 13146576.241
138  PMB+R6        6572884.844  61  13145891.688 13145891.702 13146573.460
139  PMB+R7        6572877.237  63  13145880.475 13145880.490 13146584.601
140  PMB+R8        Skipped 
141  PMB+R9        Skipped 
142  PMB+R10       Skipped 
143  PMB           7078857.059  51  14157816.118 14157816.128 14158386.124
144  PMB+F+G4      6573824.129  71  13147790.258 13147790.277 13148583.796
145  PMB+F+R2      6604285.800  72  13208715.599 13208715.619 13209520.314
146  PMB+F+R3      6565282.922  74  13130713.844 13130713.865 13131540.912
147  PMB+F+R4      6561092.473  76  13122336.946 13122336.969 13123186.368
148  PMB+F+R5      6560697.529  78  13121551.058 13121551.082 13122422.833
149  PMB+F+R6      6560676.082  80  13121512.165 13121512.189 13122406.292
150  PMB+F+R7      6560668.317  82  13121500.635 13121500.661 13122417.116
151  PMB+F+R8      Skipped 
152  PMB+F+R9      Skipped 
153  PMB+F+R10     Skipped 
154  PMB+F         7066626.165  70  14133392.330 14133392.348 14134174.691
155  JTTDCMut+G4   6487696.472  52  12975496.944 12975496.955 12976078.127
156  JTTDCMut+R2   6525060.060  53  13050226.120 13050226.131 13050818.480
157  JTTDCMut+R3   6477415.207  55  12954940.415 12954940.426 12955555.127
158  JTTDCMut+R4   6471301.694  57  12942717.389 12942717.401 12943354.455
159  JTTDCMut+R5   6470559.664  59  12941237.328 12941237.342 12941896.747
160  JTTDCMut+R6   6470504.098  61  12941130.197 12941130.211 12941811.969
161  JTTDCMut+R7   6470494.574  63  12941115.148 12941115.163 12941819.273
162  JTTDCMut+R8   Skipped 
163  JTTDCMut+R9   Skipped 
164  JTTDCMut+R10  Skipped 
165  JTTDCMut      7008023.514  51  14016149.027 14016149.037 14016719.034
166  JTTDCMut+F+G4 6482520.839  71  12965183.679 12965183.698 12965977.217
167  JTTDCMut+F+R2 6520047.438  72  13040238.877 13040238.897 13041043.592
168  JTTDCMut+F+R3 6472088.453  74  12944324.906 12944324.927 12945151.974
169  JTTDCMut+F+R4 6465970.667  76  12932093.334 12932093.356 12932942.755
170  JTTDCMut+F+R5 6465193.076  78  12930542.151 12930542.174 12931413.925
171  JTTDCMut+F+R6 6465135.551  80  12930431.103 12930431.127 12931325.230
172  JTTDCMut+F+R7 6465126.469  82  12930416.938 12930416.963 12931333.418
173  JTTDCMut+F+R8 Skipped 
174  JTTDCMut+F+R9 Skipped 
175  JTTDCMut+F+R10 Skipped 
176  JTTDCMut+F    7005578.326  70  14011296.651 14011296.670 14012079.013
177  Blosum62+G4   6586653.076  52  13173410.151 13173410.162 13173991.334
178  Blosum62+R2   6617895.321  53  13235896.642 13235896.652 13236489.001
179  Blosum62+R3   6578579.942  55  13157269.883 13157269.895 13157884.596
180  Blosum62+R4   6574379.530  57  13148873.061 13148873.073 13149510.127
181  Blosum62+R5   6573979.471  59  13148076.942 13148076.956 13148736.362
182  Blosum62+R6   6573959.691  61  13148041.383 13148041.397 13148723.155
183  Blosum62+R7   6573952.174  63  13148030.349 13148030.364 13148734.474
184  Blosum62+R8   Skipped 
185  Blosum62+R9   Skipped 
186  Blosum62+R10  Skipped 
187  Blosum62      7080484.703  51  14161071.406 14161071.416 14161641.413
188  Blosum62+F+G4 6576166.462  71  13152474.923 13152474.943 13153268.462
189  Blosum62+F+R2 6607412.034  72  13214968.068 13214968.088 13215772.783
190  Blosum62+F+R3 6567713.267  74  13135574.534 13135574.555 13136401.602
191  Blosum62+F+R4 6563147.646  76  13126447.291 13126447.313 13127296.712
192  Blosum62+F+R5 6562693.963  78  13125543.926 13125543.949 13126415.700
193  Blosum62+F+R6 6562666.903  80  13125493.805 13125493.830 13126387.933
194  Blosum62+F+R7 6562659.856  82  13125483.712 13125483.737 13126400.192
195  Blosum62+F+R8 Skipped 
196  Blosum62+F+R9 Skipped 
197  Blosum62+F+R10 Skipped 
198  Blosum62+F    7068959.302  70  14138058.604 14138058.623 14138840.966
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
199  LG4M          6511844.132  52  13023792.264 13023792.275 13024373.447
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
200  LG4X          6490432.858  57  12980979.715 12980979.728 12981616.781
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
201  LG+C10        6484404.368  52  12968912.736 12968912.747 12969493.919
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}
202  LG+C20        6450196.395  52  12900496.791 12900496.801 12901077.974
Model LG+C30 is alias for LG+POISSON+G+FMIX{C30pi1:1:0.0095783264,C30pi2:1:0.0248476365,C30pi3:1:0.0636309366,C30pi4:1:0.0537939225,C30pi5:1:0.0295885587,C30pi6:1:0.0117587936,C30pi7:1:0.0132013428,C30pi8:1:0.0236868805,C30pi9:1:0.0261687659,C30pi10:1:0.0239821974,C30pi11:1:0.0257100906,C30pi12:1:0.0465072425,C30pi13:1:0.0546794546,C30pi14:1:0.0536085131,C30pi15:1:0.0270622670,C30pi16:1:0.0403913593,C30pi17:1:0.0474212700,C30pi18:1:0.0458816478,C30pi19:1:0.0214036510,C30pi20:1:0.0290385981,C30pi21:1:0.0123391793,C30pi22:1:0.0569350229,C30pi23:1:0.0419687568,C30pi24:1:0.0339027062,C30pi25:1:0.0388777376,C30pi26:1:0.0196343766,C30pi27:1:0.0233086174,C30pi28:1:0.0622722654,C30pi29:1:0.0184803385,C30pi30:1:0.0203395454}
203  LG+C30        6445515.868  52  12891135.736 12891135.746 12891716.919
Model LG+C40 is alias for LG+POISSON+G+FMIX{C40pi1:1:0.0223853788,C40pi2:1:0.0338891820,C40pi3:1:0.0577169375,C40pi4:1:0.0252416233,C40pi5:1:0.0108607921,C40pi6:1:0.0462373793,C40pi7:1:0.0102293175,C40pi8:1:0.0147523625,C40pi9:1:0.0143161352,C40pi10:1:0.0182302541,C40pi11:1:0.0204025079,C40pi12:1:0.0425505156,C40pi13:1:0.0248627269,C40pi14:1:0.0105892988,C40pi15:1:0.0188238725,C40pi16:1:0.0086663445,C40pi17:1:0.0148496147,C40pi18:1:0.0343037402,C40pi19:1:0.0225335203,C40pi20:1:0.0174068578,C40pi21:1:0.0112207827,C40pi22:1:0.0443532245,C40pi23:1:0.0392573370,C40pi24:1:0.0196756555,C40pi25:1:0.0287690328,C40pi26:1:0.0114441177,C40pi27:1:0.0112338740,C40pi28:1:0.0582694099,C40pi29:1:0.0444272279,C40pi30:1:0.0112010942,C40pi31:1:0.0145176111,C40pi32:1:0.0114629026,C40pi33:1:0.0239628061,C40pi34:1:0.0266266492,C40pi35:1:0.0481201159,C40pi36:1:0.0371147423,C40pi37:1:0.0160476688,C40pi38:1:0.0237249267,C40pi39:1:0.0235226203,C40pi40:1:0.0261998398}
204  LG+C40        6441609.317  52  12883322.634 12883322.645 12883903.817
Model LG+C50 is alias for LG+POISSON+G+FMIX{C50pi1:1:0.0164297003,C50pi2:1:0.0273175755,C50pi3:1:0.0460247610,C50pi4:1:0.0084864734,C50pi5:1:0.0125389252,C50pi6:1:0.0343549036,C50pi7:1:0.0130241102,C50pi8:1:0.0094755681,C50pi9:1:0.0190040551,C50pi10:1:0.0151902354,C50pi11:1:0.0320534760,C50pi12:1:0.0210059850,C50pi13:1:0.0237408547,C50pi14:1:0.0239841203,C50pi15:1:0.0213748021,C50pi16:1:0.0210717705,C50pi17:1:0.0050241805,C50pi18:1:0.0166262276,C50pi19:1:0.0143945956,C50pi20:1:0.0104391130,C50pi21:1:0.0107628277,C50pi22:1:0.0148818171,C50pi23:1:0.0321480239,C50pi24:1:0.0145477978,C50pi25:1:0.0332355807,C50pi26:1:0.0143190281,C50pi27:1:0.0234478734,C50pi28:1:0.0183044983,C50pi29:1:0.0403269452,C50pi30:1:0.0135629530,C50pi31:1:0.0091880799,C50pi32:1:0.0158270022,C50pi33:1:0.0121019379,C50pi34:1:0.0353560982,C50pi35:1:0.0404495617,C50pi36:1:0.0104569232,C50pi37:1:0.0146187792,C50pi38:1:0.0093984095,C50pi39:1:0.0146773809,C50pi40:1:0.0201635562,C50pi41:1:0.0255640273,C50pi42:1:0.0039486842,C50pi43:1:0.0393652608,C50pi44:1:0.0056415419,C50pi45:1:0.0382833580,C50pi46:1:0.0039735086,C50pi47:1:0.0140269355,C50pi48:1:0.0476703673,C50pi49:1:0.0204062788,C50pi50:1:0.0117835304}
205  LG+C50        6439083.507  52  12878271.014 12878271.024 12878852.197
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}
206  LG+C60        6436742.153  52  12873588.306 12873588.317 12874169.489
Akaike Information Criterion:           LG+C60
Corrected Akaike Information Criterion: LG+C60
Bayesian Information Criterion:         LG+C60
Best-fit model: LG+C60 chosen according to BIC

All model information printed to 15cephala_compopass.phy.model
CPU time for ModelFinder: 46.371 seconds (0h:0m:46s)
Wall-clock time for ModelFinder: 46.614 seconds (0h:0m:46s)
Generating 1500 samples for ultrafast bootstrap (seed: 307898)...
CHECKPOINT: 1500 UFBoot trees and 0 UFBootSplits restored
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}

NOTE: 309941 MB RAM (302 GB) is required!
CHECKPOINT: Model parameters restored, LogL: -6436742.168
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
CHECKPOINT: Candidate tree set restored, best LogL: -6436742.168
Finish initializing candidate tree set (1)
Current best tree score: -6436742.168 / CPU time: 0.000
Number of iterations: 16
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 20 / LogL: -6437059.720 / Time: 24h:26m:17s
Iteration 20 / LogL: -6436909.325 / Time: 3h:21m:56s
Iteration 30 / LogL: -6436749.029 / Time: 11h:10m:42s (27h:20m:11s left)
Iteration 30 / LogL: -6436743.522 / Time: 33h:15m:50s (71h:36m:21s left)
Iteration 40 / LogL: -6436789.102 / Time: 17h:44m:53s (27h:44m:23s left)
Iteration 50 / LogL: -6436771.716 / Time: 25h:47m:11s (26h:49m:31s left)
Log-likelihood cutoff on original alignment: -6436858.634
Iteration 60 / LogL: -6436815.391 / Time: 32h:11m:16s (22h:21m:32s left)
Iteration 70 / LogL: -6436748.274 / Time: 38h:55m:39s (17h:29m:0s left)
Iteration 80 / LogL: -6436957.894 / Time: 46h:22m:1s (12h:19m:19s left)
Iteration 90 / LogL: -6436829.207 / Time: 53h:3m:31s (6h:33m:22s left)
Iteration 100 / LogL: -6436778.437 / Time: 59h:57m:48s (0h:36m:20s left)
Log-likelihood cutoff on original alignment: -6436858.634
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 1.000
Total number of trees received: 0
Total number of trees sent: 0
Total number of NNI searches done by myself: 86
TREE SEARCH COMPLETED AFTER 102 ITERATIONS / Time: 61h:28m:31s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -6436742.168
Optimal log-likelihood: -6436742.155
Mixture weights: 0.017 0.021 0.028 0.007 0.014 0.007 0.015 0.007 0.002 0.010 0.023 0.006 0.013 0.020 0.007 0.012 0.007 0.043 0.032 0.022 0.010 0.015 0.013 0.015 0.024 0.013 0.022 0.025 0.021 0.011 0.008 0.013 0.009 0.047 0.044 0.032 0.040 0.015 0.010 0.021 0.015 0.010 0.023 0.012 0.007 0.001 0.034 0.011 0.013 0.012 0.026 0.006 0.010 0.014 0.022 0.020 0.004 0.011 0.013 0.012
Gamma shape alpha: 0.264
Parameters optimization took 1 rounds (341.615 sec)
BEST SCORE FOUND : -6436742.155
Creating bootstrap support values...
Split supports printed to NEXUS file 15cephala_compopass.phy.splits.nex
Total tree length: 9.131

Total number of iterations: 102
CPU time used for tree search: 11629075.414 sec (3230h:17m:55s)
Wall-clock time used for tree search: 221130.214 sec (61h:25m:30s)
Total CPU time used: 11649436.178 sec (3235h:57m:16s)
Total wall-clock time used: 221653.617 sec (61h:34m:13s)

Computing bootstrap consensus tree...
Reading input file 15cephala_compopass.phy.splits.nex...
27 taxa and 54 splits.
Consensus tree written to 15cephala_compopass.phy.contree
Reading input trees file 15cephala_compopass.phy.contree
Log-likelihood of consensus tree: -6436742.152

Analysis results written to: 
  IQ-TREE report:                15cephala_compopass.phy.iqtree
  Maximum-likelihood tree:       15cephala_compopass.phy.treefile
  Likelihood distances:          15cephala_compopass.phy.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          15cephala_compopass.phy.splits.nex
  Consensus tree:                15cephala_compopass.phy.contree
  Screen log file:               15cephala_compopass.phy.log

Date and Time: Sat Apr 11 01:31:56 2020
